Citation: | TAN Chengning, HUANG Jinghan, LI Chunhong, XIA Zhining, YANG Fengqing. Applications of proteomics in the study of cell signal pathways[J]. Journal of China Pharmaceutical University, 2017, 48(4): 384-395. DOI: 10.11665/j.issn.1000-5048.20170402 |
[1] |
Wu B,Li ZY,Yang SC,et al.Regulation of apoptosis signaling pathway by common heat shock proteins[J].Chin J Biochem Mol Biol(中国生物化学与分子生物报),2011,27(1):22-31.
|
[2] |
Su LT,Xia SH.Role and mechanism of Smad proteins in TGF-β signal transduction pathway[J].J Med Mol Biol(医学分子生物杂志),2008,5(4):352-355.
|
[3] |
Yang XX,Wang K,Chen XJ,et al.Function and regulation of MAVS,the mitochondrial antiviral signaling protein in innate immunity[J].Prog Biochem Biophys(生物化学与生物物理进展),2013,40(5):397-405.
|
[4] |
Huangfu HY,Guan CY,Guo BS,et al.Research progress of proteomics and plant proteomics[J].Crop Res(作物研究),2006,20(5):577-581.
|
[5] |
Qin KW,Liu CL,Jiao BH.Expressive proteomics analysis of multiplesclerosis[J].Med Recap(医学综述),2010,16(22):3386-3384.
|
[6] |
Liu YF,Chen YH,Li MY,et al.Quantitative proteomic analysis identifying three annexins as lymph node metastasis-related proteins in lung adenocarcinoma[J].Med Oncol,2012(29):174-184.
|
[7] |
Li WK,Li ZB.Proteomics-A rising discipline of protein molecular biology[J].J Changsha Med Univ(长沙医学院学报),2007,12(25):31-42.
|
[8] |
Farber GK.New approaches to rational drug design[J].Pharm Ther,1999,84(3):327-332.
|
[9] |
Li BL.Functional proteomics[J].Chem Life(生命化学),1998,18(6):1-3.
|
[10] |
Sohn J,Do KA,Liu S,et al.Functional proteomics characterization of residual triple-negative breast cancer after standard neoadjuvant chemotherapy[J].Ann Oncol,2013,24(10):2522-2526.
|
[11] |
Guo CY,Zhan KH.Research progress and application in technology of proteome[J].J Yunnan Agric Univ(云南农业大学学报),2010,25(4):583-591.
|
[12] |
Chen Y,Xu Y,Ying HJ,et al.Research progress of affinity chromatography[J].Ion Exc Adsorp(离子交换与吸附),2001,17(3):276-280.
|
[13] |
Zhen Y,Shi JS.Application of mass spectrometry in proteomics studies[J].J Nanjing Forestry Univ(Nat Sci)(南京林业大学学报),2011,35(1):103-108.
|
[14] |
Nesvizhskii AI,Vitek O,Aebersold R.Analysis and validation of proteomic data generated by tandem mass spectrometry[J].Nat Methods,2007,4(10):787-797.
|
[15] |
Deng JS,Zhao F,Yu XY,et al.Identification of the protective role of DJ-1 in hypoglycemicastrocyte injury using proteomics[J].J Proteome Res,2015,14:2839-2848.
|
[16] |
Cheng TL, Chen JH, Wang PK, et al. Quantitative proteomics analysis reveals that S-nitrosoglutathione reductase(GSNOR)and nitric oxide signaling enhance poplar defense against chilling stress[J].Planta,2015,242:1361-1390.
|
[17] |
Mok L,Wynne JW,Ford K,et al.Proteomic analysis of pteropusalecto kidney cells in response to the viral mimic,Poly I:C[J].Proteome Sci,2015,13(25):2-11.
|
[18] |
Xia QC,Zeng R,Cao XJ,et al.Protein Chemistry and Proteomics(蛋白质化学与蛋白质组学)[M].Beijing:Science Publishing Company,2004:467-470.
|
[19] |
Shan Q,Lou XM,Xiao T,et al.Cancer/testis antigen microarray to screen autoantibody biomarkers of non-small cell lung cancer[J].Cancer Lett,2013,328(1):160-167.
|
[20] |
Xiao XY,Wei XP,He DC.Applicationof protein microarraytechnique in screening of serum lung cancer marker proteins[J].Chin Sci(Series C)[中国科学(C辑)],2003,33(4):323-328.
|
[21] |
Fields S,Song OK.A novel genetic system to detect protein-protein interactions[J].Nature,1989,340(6230):245-246.
|
[22] |
Liu Z,Shi L,Tang Q,et al.Genome-wide identification and transcriptional expression analysis of mitogen-activated protein kinase and mitogen-activated protein kinase kinase genes in Capsicum annuum[J].Frout Plant Sci,2015,6:780.
|
[23] |
Park SY,Choi HK,Seo JS,et al.DNAJB1 negatively regulates MIG6 to promote epidermal growth factor receptor signaling[J].Biochim Biophy Acta,2015,1853(10):2722-2730.
|
[24] |
Hadweh P,Habelhah H,Kieff E,et al.The PP4R1 subunit of protein phosphatase PP4 targets TRAF2 and TRAF6 to mediate inhibition of NF-κB activation[J].Cell Sig,2014,26(12):2730-2737.
|
[25] |
Wang XW,Guo TY,Peng F,et al.Proteomic and functional profiles of a follicle-stimulating hormone positive human nonfunctional pituitary adenoma[J].Electrophoresis,2015,36(11/12):1289-1304.
|
[26] |
Wu Z,Wang L,Guo ZG,et al.Experimental study on differences in clivuschordoma bone invasion:an iTRAQ-based quantitative proteomic analysis[J].PLoS ONE,2015,10(3):e011952.
|
[27] |
Peng XC,Gong FM,Chen Y,et al.Proteomics identification of PGAM1 as a potential therapeutic target for urothelial bladder cancer[J].J Proteomics,2016,132:85-92.
|
[28] |
Li LD,Sun HF,Liu XX,et al.Down-regulation of NDUFB9 promotes breast cancer cell proliferation,metastasis by mediating mitochondrial metabolism[J].PLoS ONE,2015,10(12):e0144441.
|
[29] |
Zanivan S,Meves A,Behrendt K,et al.In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis[J].Cell Rep,2013,3(2):552-566.
|
[30] |
Ying Q, Ansong E, Diamond AM, et al. Quantitative proteomic analysis reveals that anti-cancer effects of selenium-binding protein 1 in vivo are associated with metabolic pathways[J].PLoS ONE,2015,10(5):e0126285.
|
[31] |
Lin YY,Xie GB,Xia J,et al.TBMS1 exerts its cytotoxicity in NCI-H460 lung cancer cells through nucleolar stress-induced p53/MDM2-dependent mechanism,a quantitative proteomics study[J].Biochim Biophy Acta,2016,1864(2):204-210.
|
[32] |
Ger M, Kaupinis A, Ceniene AN, et al. Quantitative proteomic analysis of anticancer drug RH1 resistance inliver carcinoma[J].BBA-Proteins Proteom,2016(1864):219-232.
|
[33] |
Diamond DL, Proll SC, Jacobs JM, et al. Proteomics:applying proteomic technologies to the study of liver function and disease[J].Hepatology,2006,44(2):299-308.
|
[34] |
Vildhede A,Wis'n iewski JR,Norén A,et al.Comparative proteomic analysis of human liver tissue and isolated hepatocytes with a focus on proteins determining drug exposure[J].J Proteome Res,2015,14(8):3305-3314.
|
[35] |
Liu Y,Dai M,Bi Y,et al.Active smoking,passive smoking,and risk of nonalcoholic fatty disease(NAFLD):a population-based study in china[J].J Epidemiol,2013,23(2):115-121.
|
[36] |
Calvert VS, Collantes R, Lilariny H, et al. A systems biology approach to the pathogenesis of obesity-related nonalcoholic fatty liver disease using reverse phase protein microarrays for multiplexed cell signaling l.Proteomic study on usnic-acid-induced hepatotoxicity in rats[J].J Agric Food Chem,2012,60: 7312-7317.
|
[37] |
Wang QH,Yang X,Li XL,et al.Based on proteomics to study the property and flavor of Radix Aconiti Lateralis Preparata,Rhizoma Zingiberis,Pricklyash Peel[J].World Chin Med,2015,10:1824-1836.
|
[38] |
Sun DB,Shi HY,Guo DH,et al.Analysis of protein expression changes of the Vero E6 cells infectedwith classic PEDV strain CV777 by using quantitative proteomic technique[J].J Virol Methods,2015,218(21):27-39.
|
[39] |
Guo X,Hu H,Chen FZ,et al.iTRAQ-based comparative proteomic analysis of Vero cells infected with virulent and CV777 vaccine strain-like strains of porcine epidemic diarrhea virus[J].J Proteomics,2016,130:65-75.
|
[40] |
Du C,Liu HF,Lin YZ,et al.Proteomic alteration of equine monocyte-derived macrophages infected with equine infectious anemia virus[J].Proteomics,2015,15(11):1843-1858.
|
[41] |
Sun YT,Hu BL,Fan CF,et al.iTRAQ-based quantitative subcellular proteomic analysis of Avibirnavirus-infected cells[J].Electrophoresis,2015,36(14):1596-1611.
|
[42] |
Berard AR, Coombs KM, Severini A. Quantification of the host response proteome after herpes simplex virus type 1 infection[J].J Proteome Res,2015,14(5):2121-2142.
|
[43] |
Abraham R,Mudaliar P,Jaleel A,et al.High throughput proteomic analysis and acomparative review identify the nuclear chaperone,nucleophosmin among the common set of proteins modulated in Chikungunya virus infection[J].J Proteomics,2015,120:126-141.
|
[44] |
Preciado D,Poley M,Tsai S,et al.A proteomic characterization of NTHilysates[J].Int J Pediatr Otorhi,2016,80(1):8-16.
|
[45] |
Santoro MG,Rossi A,Amici C.NF-kappaB and virus infection:who controls whom[J].EMBO J,2003,22(11):2252-2260.
|
[46] |
Geddes JMH, Caza M, Croll D, et al. Analysis of the protein kinase a-regulated proteome of Cryptococcusne of ormans identifies a role for the ubiquitin-proteasome pathway in capsule formation [J].mBio,2016,7(1):1862-1877.
|
[47] |
Elnakady YA,Chatterjee I,Bischoff M,et al.Investigations to the antibacterialmechanism of action of kendomycin[J].PLoS ONE,2016,11(1):e0146165.
|
[48] |
Xu Y,Wang Y,Yan L,et al.Proteomic analysis reveals a synergistic mechanism of fluconazole and berberine against fluconazole-resistant caradidaalbicarrs:endogenous ROS augmentation[J].J Proteome Res,2009,8(11):5296-5304.
|
[49] |
Kempf SJ,Sepe S,Toerne CV,et al.Neonatal irradiation leads to persistent proteome alterations involved in synaptic plasticity in the mouse hippocampus and cortex[J].J Proteome Res,2015,14(11):4674-4686.
|
[50] |
Lei Q,Chen J,Huang WX,et al.Proteomic analysis of the effect of extracellular calcium ions on human mesenchymal stem cells:Implications for bone tissue engineering[J].Chemico-Biol Interact,2015,233:139-146.
|
[51] |
Ge M,Ke RH,Cai TY,et al.Identification and proteomic analysis of osteoblast-derived exosomes[J].Biochem Biophys Res Commun,2015,467(1):27-32.8.
|
[52] |
Ferre P.The biology of peroxisome proliferator-activated receptors:relationship with lipid metabolism and insulin sensitivity[J].Diabetes,2004,53(suppl 1):S43-50.
|
[53] |
Miller I,Serchi T,Cambier S,et al.Hexabromocyclododecane(HBCD)induced changes in the liver proteome of eu- and hypothyroid female rats[J].Toxicol Lett,2016,245:40-51.
|
[54] |
Ilavenil S,Al-Dhabi NA,Srigopalram S,et al.Acetaminophen induced hepatotoxicity in Wistar rats—A proteomic approach[J].Mol,2016,21(2):161.
|
[55] |
Kim SW,Park TJ,Chaudhari HN,et al.Hepatic proteome and its network response to supplementation of an anti-obesity herbal mixture in diet-induced obese mice[J].Biotechnol Bioproce Eng,2015,20(4):775-793.
|
[56] |
Liu Q,Zhao XP,Lu XY,et a
|